2024 SMBE Regional Meeting in Taiwan: Evolutionary Genomics & Bioinformatics
Activity date
：
2024-03-28
~
2024-03-30
Place
：
National Taiwan University, Taiwan
Abstracts
Activity published date
2023-11-07
Call for abstracts
- We invite abstracts represent interesting results in the area of bioinformatics, genomics, evolution, computational biology and other related topics.
- Only unpublished or within one-year studies with supervisor’s approval will be considered
- All submissions will be reviewed and evaluated by the Scientific Committee. The evaluation is based solely on the novelty of research subject and abstract contents.
- Authors are required to follow the instructions in the ABSTRACT TEMPLATE. Inappropriate template will be not reviewed.
- Please convert WORD format into PDF format, and mailed both WORD and PDF formats to taiwansecb@gmail.com using the subject “SMBE regional meeting TW – abstract submission” before Feb 26, 2024.
- The accepted abstracts will be presented as posters, and several abstracts will be selected as short talks (12 min + 3 min Q&A). Presenters must register for the conference.
- Poster must be in A0 format (Hight 118.9cm X Width 84.1cm) and written in English.
Travel Grant Opportunities
To encourage the participation of young scientists, including graduate students and postdoctoral researchers, we are pleased to announce the availability of travel grants. Applicants interested in applying for a travel grant are invited to indicate their intention on the abstract submission form.
- Domestic applicants must be TSECB members to be eligible for subsidies. How to become a TSECB member, please refer to this page.
Important Dates
- Abstract Submission Deadline: February 26, 2024
- Notification of Acceptance: March 4, 2024
- Conference Dates: March 28-30, 2024
Accetped abstracts
Selected as short talk (12min + 3 Q&A)
| Session | Title | Presenter |
|---|---|---|
| O1 | Unraveling the biogeography insights of Saccharomyces cerevisiae | Yu-Chen Yeh |
| O2 | A long-standing T2R subtype in elasmobranchs: revisiting the origin of vertebrate bitter taste receptors | Akihiro Itoigawa |
| O3 | Spatial radial distribution of centromeres, repetitive DNAs, and breaks of synteny observed in gibbon-human chromosomes within the nucleus | Hideyuki Tanabe |
| O4 | Spatial transcriptome with MAS-IsoSeq: a-MAIZE-zing resolution for leaf embryogenesis | Kong Wye Lup |
| O5 | Denisovan DNA in present-day and ancient modern humans | Yoko Satta |
| O6 | Inferring the Evolutionary Dynamics of Mycobacterium tuberculosis in Taiwan through Molecular Epidemiology | Rou-Ya Bai |
| O7 | Inferring evolutionary history and admixed genetic ancestry in the Taiwanese Siraya people | Wen-Ya Ko |
| O8 | Is there any population differentiation at particular SNPs in the human CYP1A2 gene? | Sayaka Chiku |
Poster presentation
| No. | Title | Presenter |
|---|---|---|
| P01 | QTL mapping and transcriptome analysis identify candidate genes regulating seed longevity in Taiwan weedy rice | Yih-Lin Chen |
| P02 | Convergent evolution of gene copy numbers associated with freshwater colonization in the three-spined stickleback | Bo-Jyun Chen |
| P03 | Comparative Analysis of Tissue Fibrosis Pathogenesis in Systemic Sclerosis: A Single-Cell RNA Sequencing Study of Skin and Lung Samples | Lee Shih Ching |
| P04 | Diagnosing patients with Kawasaki disease based on LightGBM model trained by routine blood test results | Yuan-Han Lee |
| P05 | Genomic evolution of the opsin genes in 55 Amphibians | Jinn-Jy Lin |
| P06 | k-mer Pipeline Advances Accurate Gene Expression Prediction and Motif Identification in Plant Stress Responses | Lavakau Thalimaraw |
| P07 | MLG2Net: Molecular Local Global Graph Network for Drug Response Prediction in Lung Cancer Cell Lines | Tran Thi Oanh |
| P08 | Single-cell multi-omics analysis of neuroblastoma cell differentiation | Kai Jie Hu |
| P09 | Exploring the Mechanism of Profibrotic Macrophage Differentiation in COVID-19-Induced Pulmonary Fibrosis at Single-Cell Level | Chen-Hao Huang |
| P10 | Predicting Age with Cellular Gene Expression Dispersion | Chen-Pei Chiang |
| P11 | An automated tool to integrate diverse RNA-seq analysis pipeline and facilitate systematic candidate gene list extraction | Hua-Yi Lin |
| P12 | Genomic identification of the cis-regulatory module interactions based on transcription factor binding sites and epigenetics | You-Aa Kou |
| P!3 | Predicting RNA-protein interaction using deep learning models | Han-Ting Hong |
| P14 | Single-Cell RNA-Seq Analysis reveals stage-specific regulatory lncRNAs in neuroblastoma progression | I-Chen Liu |
| P!5 | Cancer Marker Database: a repository of diagnostic and prognostic gene markers of human cancers | Shang-Yi Lu |
| P!6 | Genome analysis of the brown bear in Hokkaido, Japan, revealed population contraction in the last glacial period and recent expansion restricted by environmental factors | Endo Yu |
| P17 | Marker gene identification algorithm of precision clustering for single cell sequencing | Zhe-Yuan Li |
| P18 | Deciphering the Role of Tumor-Associated Macrophages in Head and Neck Squamous Cell Carcinoma from Single-Cell RNA Sequencing | Po-Yu Hsu |
| P19 | A Framework for Modeling Single-cell RNA Velocity and Epigenome–transcriptome Interactions | Kuan-Chiun Tung |
| P20 | Comparative genomics and machine learning reveal adaptive evolution in a motor cortex enhancer in the ancestor of modern bats | Bai-Wei Lo |
| P21 | Using an explainable deep learning model for Enterovirus A71 genotyping | PHAM THI HUONG GIANG |
| P22 | Determine the Genetic Similarity of Synchronous Endometrial and Ovarian Cancers with Variants in Polyguanine Sequences | Yen-Chun Chen |
| P23 | Differentiating Migration Rates Using Selective Sites Instead of Neutral Sites | Jui-Hsuan Chien |
| P24 | Decoding Nocardia Genomes: A Multifaceted Approach to Understanding Evolution, Pathogenicity, and Biosynthetic Potential | Kiran Kumar Eripogu |
| P25 | Extracting Hidden Phylogenomic Diversity from Large-Genome Organisms: A Targeted Sequence Capture Approach in Lomariopsis Ferns | Yi-Hsuan Wu |
| P26 | PhastPROBE: Towards Evolutionary Conservation Score Estimation using Hi-C and ChIP-seq Data | Ryan Rey M. Daga |
| P27 | Exploring the evolution of plant symbiotic nitrogen-fixing bacteria via analysis of genomics data and plant host | Bing-Syuan Wu |
| P28 | The role of bacterial humification-enhancing enzymes in soil organic matter formation: distribution, evolution and function | Chieh-Ning Chiu |
| P29 | Evaluation of assembly- and reference-based metagenomics pipelines in abundance estimation for colorectal cancer classification | Ching-Jim Lin |
| P30 | Constructing Taiwanese Reference Pangenome (TW-graph) to Improve Read Mapping Rates | Hsien-Chun Chiu |
| P31 | A deep learning approach to identify the target genes of cis-regulatory modules | Guan-Liang He |
| P32 | Evaluating the Performance of HLA Callers on CYP2D6 Genotyping Using HPRC Genomes | Guan-Ying Wu |
| P33 | Exploring potential methylation markers for ovarian cancer by cervical scraping samples | Ju-Yin Lien |
| P34 | Investigation of the genomic landscape of internal tandem duplication (ITD) in tumors | Lu Ann Hii |
| P35 | Next-Generation Sequencing (NGS) Analysis: Insights into Soil Microbiome Bacterial Diversity of Pb Contaminated Agricultural Soil around Lapindo Mud Area, Sidoarjo, East Java, Indonesia" | MohammedAlHadi Ibrahim Bosha Ibrahim |
| P36 | Investigation of traits under positive selection on standing variants acting in the Japanese population | Risa L. Iwasaki |
| P37 | KIR Allele Typing of Taiwanese Population Using Graph-KIR | Ting-Jian Wang |
| P38 | Distance-based module detection method for identifying stage transitional gene sets and drug discovery in neuroblastoma through single-cell RNA sequencing | Wei-Ting Weng |
| P39 | Explore the distribution and evolution of soil environmental nitrogen-fixing bacteria via phylogenetic and genomic analyses | Ya-Fei Chen |
| P40 | Investigate the evolutionary patterns on the genes involved in rapid movement of Mimosa and other mimosoid species by comparative genomics and transcriptomics | Yan-Han Fang |
| P41 | Insights into Age-Related Differences in Hormone Receptor-Positive Breast Cancer: An Analysis of Public Genomic Databases | Yu-Ling Liu |
| P42 | The structural characterization of mutations in the HA protein of influenza virus | Yun-Ting Tsai |
| P43 | To dissect the effect of immuno-microenvironment on the evolutionary trajectory of early-stage ovarian clear cell carcinoma | Yu-Yi Huang |
| P44 | Unveiling the habitat adaptation of nitrogen-fixing cyanobacteria via phylogenetic and genomic analyses | Li-Yin Peng |
Travel Grant Winners
- Bo-Jyun Chen, SOKENDAI, Japan
- Sayaka Chiku, SOKENDAI, Japan
- Endo Yu, Hokkaido University, Japan
- Bai-Wei Lo, Max Planck Institute for Molecular Genetics, Germany
- Risa L. Iwasaki, SOKENDAI, Japan
- Ibraho Bosha Ahmed, University of Brawijaya, Indonesia
- Yuan-Han Lee, National Cheng Kung University
- You-An Kou, National Cheng Kung University
- Rou-Ya Bai, National Tsing Hua University
- Jui-Hsuan Chien, National Tsing Hua University
- Ya-Fei Chen, National Chung Hsing University
- Yan-Han Fang, National Cheng Kung University